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Biblical Genetics

By: Dr. Robert Carter
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  • Summary

  • Biblical Genetics is a vlog/podcast by Dr. Robert Carter. His posts explore modern genetics through the lens of biblical history, and vice versa.
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Episodes
  • What is the longest match between the human and chimpanzee genomes?

    What is the longest match between the human and chimpanzee genomes?
    May 17 2024
    Human-chimpanzee similarity is a hotly-debated topic in the evolution-creation wars. Are we 98, 95, 90, or 85% similar? One way to get at the question is to ask what is the longest stretch of DNA that is shared between the two species. This is a very difficult question to answer! But, unperturbed, Dr Rob set out to answer it. Will our fearless hero be able to pull it off? Spoiler alert: not quite, but the path of discovery is still very interesting. LastZ github.com/lastz/lastz LastZ chaining github.com/hillerlab/make_lastz_chains Mummer4 mummer4.github.io/ Blast blast.ncbi.nlm.nih.gov/Blast.cgi Telomere-to-Telomere Consortium primate projects github.com/marbl/Primates Python python.org/ Standard Bases: A: Adenine C: Cytosine G: Guanine T: Thymine (in DNA) U: Uracil (in RNA) Ambiguous Bases (IUPAC Codes): These codes are used when there is ambiguity in the nucleotide present at a particular position: R: A or G (puRine) Y: C or T (pYrimidine) S: G or C W: A or T (Weak) K: G or T (Keto) M: A or C (aMino) B: C, G, or T (not A) (B comes after A) D: A, G, or T (not C) (D comes after C) H: A, C, or T (not G) (H comes after G) V: A, C, or G (not T) (V comes after U; U is replaced with T in DNA) N: Any base (A, C, G, T) (N for any nucleotide) Silver Comet Trail silvercometga.com/
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    29 mins
  • Junk or genius? How functional is the human genome? Part 2

    Junk or genius? How functional is the human genome? Part 2
    Mar 19 2024
    https://youtu.be/-jpoxCZgZKQ Is the human genome highly functional or mostly junk? This is a question that is not only being asked in the creation-evolution debate; it is a question raging in the ivory tower as well. The 'old guard' is much more likely to resist any claim that large swaths of the genome are useful. The 'young punks' in science is more willing to accept the obvious fact that the genome is highly functional. Who is going to win? In this episode, Dr Rob puts a few more nails in the coffin of junk DNA.. Notes and links:' Carter 2023 What proportion of the human genome is actually functional? And how much variation is tolerable? Chen et al. 2023 A genomic mutational constraint map using variation in 76,156 human genomes Moran 2023 What's in your genomes? 90% of your genome is junk
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    16 mins
  • DNA – highly functional or mostly junk? Part 1

    DNA – highly functional or mostly junk? Part 1
    Mar 3 2024
    Is the human genome highly functional or mostly junk? This is a question that is not only being asked in the creation-evolution debate; it is a question raging in the ivory tower as well. The 'old guard' is much more likely to resist any claim that large swaths of the genome are useful. The 'young punks' in science is more willing to accept the obvious fact that the genome is highly functional. Who is going to win? In this episode, Dr Carter highlights four new studies that ratchet the argument toward high function. Notes and links:' Carter 2023 What proportion of the human genome is actually functional? And how much variation is tolerable? Zhang et al. 2023 FOXP3 recognizes microsatellites and bridges DNA through multimerization Walter 2024 Are non-protein coding RNAs junk or treasure? Stepankiw et al. 2023 The human genome contains over a million autonomous exons Chen et al. 2023 A genomic mutational constraint map using variation in 76,156 human genomes Moran 2023 What's in your genomes? 90% of your genome is junk
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    28 mins
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